Building with: 'sudo docker build -t eval_container_geology_and_geophysics --build-arg SETUP_FILE=./setups/setup_geology_and_geophysics.sh --build-arg PROMPT_FILE=./prompts/geology_and_geophysics/prompt0.txt --build-arg GROUND_TRUTH=./ground_truths/setup_geology_and_geophysics/geology_and_geophysics_0 --build-arg AGENT_FILE=./agent_filetoolkit.py --build-arg TOOL_DESC=./tool_descs/tf_af_and_DRAFT/filetoolkit.txt .'
DOCKER Build output:

Detected differences: 
Changes not staged for commit:
  (use "git add/rm <file>..." to update what will be committed)
  (use "git restore <file>..." to discard changes in working directory)
	deleted:    06_Archive/01_Old_Reports/site_report_1.pdf

Untracked files:
  (use "git add <file>..." to include in what will be committed)
	01_Field_Work/01_Site_Reports/site_report_1.pdf

no changes added to commit (use "git add" and/or "git commit -a")


Full output: {'messages': [SystemMessage(content='You are an AI agent operating with the file system.', additional_kwargs={}, response_metadata={}, id='bc20526d-b1a0-472d-8673-3b041e009d2e'), HumanMessage(content='Move the first site report to the Archive reports folder', additional_kwargs={}, response_metadata={}, id='98010852-1f2e-4cb4-bfec-ea0663fdaf10'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_dq5rhdvMoUJ9UOoK5Q5jgQiL', 'function': {'arguments': '{"pattern":"*site_report*"}', 'name': 'file_search'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 18, 'prompt_tokens': 1405, 'total_tokens': 1423, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_f5bdcc3276', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-cb36d510-2692-4bd1-805b-b7feae696081-0', tool_calls=[{'name': 'file_search', 'args': {'pattern': '*site_report*'}, 'id': 'call_dq5rhdvMoUJ9UOoK5Q5jgQiL', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1405, 'output_tokens': 18, 'total_tokens': 1423, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='06_Archive/01_Old_Reports/old_site_report_2.pdf\n06_Archive/01_Old_Reports/old_site_report_1.pdf\n01_Field_Work/01_Site_Reports/site_report_1.pdf\n01_Field_Work/01_Site_Reports/site_report_2.pdf', name='file_search', id='a0283ea2-b764-4559-ade7-5ebc95808163', tool_call_id='call_dq5rhdvMoUJ9UOoK5Q5jgQiL'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_wUC6Qw0sBK1WzACfl7gXRPC7', 'function': {'arguments': '{"source_path":"/01_Field_Work/01_Site_Reports/site_report_1.pdf","destination_path":"/06_Archive/01_Old_Reports/site_report_1.pdf"}', 'name': 'move_file'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 49, 'prompt_tokens': 1493, 'total_tokens': 1542, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_f5bdcc3276', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-beef67f4-4f76-4742-84db-79b42b112c03-0', tool_calls=[{'name': 'move_file', 'args': {'source_path': '/01_Field_Work/01_Site_Reports/site_report_1.pdf', 'destination_path': '/06_Archive/01_Old_Reports/site_report_1.pdf'}, 'id': 'call_wUC6Qw0sBK1WzACfl7gXRPC7', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1493, 'output_tokens': 49, 'total_tokens': 1542, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='Error: Access denied to source_path: /01_Field_Work/01_Site_Reports/site_report_1.pdf. Permission granted exclusively to the current working directory', name='move_file', id='2b1e8def-3bdc-44c6-a33e-23c20861c2cf', tool_call_id='call_wUC6Qw0sBK1WzACfl7gXRPC7'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_pxkfRohkAlxz1KxQF3SGHgrA', 'function': {'arguments': '{"dir_path":"/"}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 16, 'prompt_tokens': 1581, 'total_tokens': 1597, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1536}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_f5bdcc3276', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-38aa001e-0db1-48e0-87d2-82e05eb9ef1e-0', tool_calls=[{'name': 'list_directory', 'args': {'dir_path': '/'}, 'id': 'call_pxkfRohkAlxz1KxQF3SGHgrA', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1581, 'output_tokens': 16, 'total_tokens': 1597, 'input_token_details': {'audio': 0, 'cache_read': 1536}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='Error: Access denied to dir_path: /. Permission granted exclusively to the current working directory', name='list_directory', id='48fe79fb-58a8-43e7-8ff0-932da6d21651', tool_call_id='call_pxkfRohkAlxz1KxQF3SGHgrA'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_apxUaDddbBGBeJSGaiKzAbq2', 'function': {'arguments': '{}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 11, 'prompt_tokens': 1621, 'total_tokens': 1632, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_d8864f8b6b', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-9fed8b55-df46-4d75-bbb4-a294ac62f406-0', tool_calls=[{'name': 'list_directory', 'args': {}, 'id': 'call_apxUaDddbBGBeJSGaiKzAbq2', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1621, 'output_tokens': 11, 'total_tokens': 1632, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='03_Research\n05_Publications\n06_Archive\n04_Presentations\n01_Field_Work\n02_Lab_Analysis\n.git', name='list_directory', id='87c4e19b-fb2b-4c32-89c1-4d8aa410ed1f', tool_call_id='call_apxUaDddbBGBeJSGaiKzAbq2'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_XNQ1mjT59yaxmXJ7hT5g1J6j', 'function': {'arguments': '{"dir_path": "/01_Field_Work"}', 'name': 'list_directory'}, 'type': 'function'}, {'id': 'call_ymm0cppv0kwTGVYc39VhV3Wz', 'function': {'arguments': '{"dir_path": "/06_Archive"}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 53, 'prompt_tokens': 1667, 'total_tokens': 1720, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1536}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_f5bdcc3276', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-d9fdc073-0b32-4b24-93b9-a8355d498611-0', tool_calls=[{'name': 'list_directory', 'args': {'dir_path': '/01_Field_Work'}, 'id': 'call_XNQ1mjT59yaxmXJ7hT5g1J6j', 'type': 'tool_call'}, {'name': 'list_directory', 'args': {'dir_path': '/06_Archive'}, 'id': 'call_ymm0cppv0kwTGVYc39VhV3Wz', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1667, 'output_tokens': 53, 'total_tokens': 1720, 'input_token_details': {'audio': 0, 'cache_read': 1536}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='Error: Access denied to dir_path: /01_Field_Work. Permission granted exclusively to the current working directory', name='list_directory', id='ab6ca1cc-09ff-4bf0-bd50-28b53320b65b', tool_call_id='call_XNQ1mjT59yaxmXJ7hT5g1J6j'), ToolMessage(content='Error: Access denied to dir_path: /06_Archive. Permission granted exclusively to the current working directory', name='list_directory', id='1505d151-ce50-47e7-af91-59593355a2f5', tool_call_id='call_ymm0cppv0kwTGVYc39VhV3Wz'), AIMessage(content="It seems that I don't have the necessary permissions to access the directories required to move the file. Please ensure that the permissions are set correctly for the current working directory, or provide access to the specific directories involved.", additional_kwargs={'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 43, 'prompt_tokens': 1775, 'total_tokens': 1818, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1536}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_d8864f8b6b', 'finish_reason': 'stop', 'logprobs': None}, id='run-dee6265a-1b36-43df-a0fe-8d261a9d6f51-0', usage_metadata={'input_tokens': 1775, 'output_tokens': 43, 'total_tokens': 1818, 'input_token_details': {'audio': 0, 'cache_read': 1536}, 'output_token_details': {'audio': 0, 'reasoning': 0}})]}
On branch master
Changes not staged for commit:
  (use "git add/rm <file>..." to update what will be committed)
  (use "git restore <file>..." to discard changes in working directory)
	deleted:    06_Archive/01_Old_Reports/site_report_1.pdf

Untracked files:
  (use "git add <file>..." to include in what will be committed)
	01_Field_Work/01_Site_Reports/site_report_1.pdf

no changes added to commit (use "git add" and/or "git commit -a")


for prompt Move the first site report to the Archive reports folder
Building with: 'sudo docker build -t eval_container_geology_and_geophysics --build-arg SETUP_FILE=./setups/setup_geology_and_geophysics.sh --build-arg PROMPT_FILE=./prompts/geology_and_geophysics/prompt2.txt --build-arg GROUND_TRUTH=./ground_truths/setup_geology_and_geophysics/geology_and_geophysics_2 --build-arg AGENT_FILE=./agent_filetoolkit.py --build-arg TOOL_DESC=./tool_descs/tf_af_and_DRAFT/filetoolkit.txt .'
DOCKER Build output:

Test successfully passed
Building with: 'sudo docker build -t eval_container_geology_and_geophysics --build-arg SETUP_FILE=./setups/setup_geology_and_geophysics.sh --build-arg PROMPT_FILE=./prompts/geology_and_geophysics/prompt3.txt --build-arg GROUND_TRUTH=./ground_truths/setup_geology_and_geophysics/geology_and_geophysics_3 --build-arg AGENT_FILE=./agent_filetoolkit.py --build-arg TOOL_DESC=./tool_descs/tf_af_and_DRAFT/filetoolkit.txt .'
DOCKER Build output:

Detected differences: 
Changes not staged for commit:
  (use "git add/rm <file>..." to update what will be committed)
  (use "git restore <file>..." to discard changes in working directory)
	deleted:    06_Archive/01_Old_Reports/journal_article_1.pdf

Untracked files:
  (use "git add <file>..." to include in what will be committed)
	06_Archive/journal_article_1.pdf

no changes added to commit (use "git add" and/or "git commit -a")


Full output: {'messages': [SystemMessage(content='You are an AI agent operating with the file system.', additional_kwargs={}, response_metadata={}, id='8ffba887-be0a-40de-8c94-e80f404266a8'), HumanMessage(content='Move the first journal article to the Archive folder', additional_kwargs={}, response_metadata={}, id='c51623a5-696e-482c-acc8-891d450ba034'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_OvUvIpBjhzxXTzASzDepQtKJ', 'function': {'arguments': '{"dir_path":"/"}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 16, 'prompt_tokens': 1404, 'total_tokens': 1420, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_d8864f8b6b', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-0bcbc110-2cd8-4ff0-a6a1-ce0faf529872-0', tool_calls=[{'name': 'list_directory', 'args': {'dir_path': '/'}, 'id': 'call_OvUvIpBjhzxXTzASzDepQtKJ', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1404, 'output_tokens': 16, 'total_tokens': 1420, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='Error: Access denied to dir_path: /. Permission granted exclusively to the current working directory', name='list_directory', id='d7da020c-82da-4e76-9611-b600b6d4e0ca', tool_call_id='call_OvUvIpBjhzxXTzASzDepQtKJ'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_BcqFwsidJS3CJP20UjlTCUAP', 'function': {'arguments': '{}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 11, 'prompt_tokens': 1444, 'total_tokens': 1455, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_d8864f8b6b', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-d14c9dba-9bdf-4688-b1ce-7b60c9693cda-0', tool_calls=[{'name': 'list_directory', 'args': {}, 'id': 'call_BcqFwsidJS3CJP20UjlTCUAP', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1444, 'output_tokens': 11, 'total_tokens': 1455, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='03_Research\n05_Publications\n06_Archive\n04_Presentations\n01_Field_Work\n02_Lab_Analysis\n.git', name='list_directory', id='99c91b69-2a90-404e-9229-56ecc5c8cfe4', tool_call_id='call_BcqFwsidJS3CJP20UjlTCUAP'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_qFxhAjXqhQNVNmxmz2ZUFpQb', 'function': {'arguments': '{"dir_path":"/05_Publications"}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 19, 'prompt_tokens': 1490, 'total_tokens': 1509, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 0}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_55d88aaf2f', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-dbc2507a-4d75-4fc1-a19e-543daabea3b2-0', tool_calls=[{'name': 'list_directory', 'args': {'dir_path': '/05_Publications'}, 'id': 'call_qFxhAjXqhQNVNmxmz2ZUFpQb', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1490, 'output_tokens': 19, 'total_tokens': 1509, 'input_token_details': {'audio': 0, 'cache_read': 0}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='Error: Access denied to dir_path: /05_Publications. Permission granted exclusively to the current working directory', name='list_directory', id='3993e7dc-816a-4229-88cd-824f6f64b8c2', tool_call_id='call_qFxhAjXqhQNVNmxmz2ZUFpQb'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_Pw1S1ilJwuqw0xobbDMgDN9K', 'function': {'arguments': '{"dir_path":"05_Publications"}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 18, 'prompt_tokens': 1537, 'total_tokens': 1555, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_f5bdcc3276', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-3b3cb64f-c8e9-4ad5-ab4e-1571014edf26-0', tool_calls=[{'name': 'list_directory', 'args': {'dir_path': '05_Publications'}, 'id': 'call_Pw1S1ilJwuqw0xobbDMgDN9K', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1537, 'output_tokens': 18, 'total_tokens': 1555, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='02_Book_Chapters\n01_Journal_Articles', name='list_directory', id='44ddc663-5bfc-4ab0-a064-67bb8a7b257c', tool_call_id='call_Pw1S1ilJwuqw0xobbDMgDN9K'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_PvJHZORBp93qtBgNyO3a6rLJ', 'function': {'arguments': '{"dir_path":"05_Publications/01_Journal_Articles"}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 24, 'prompt_tokens': 1573, 'total_tokens': 1597, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_f5bdcc3276', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-91330621-b93c-4f6c-b273-e5ef56bfd11c-0', tool_calls=[{'name': 'list_directory', 'args': {'dir_path': '05_Publications/01_Journal_Articles'}, 'id': 'call_PvJHZORBp93qtBgNyO3a6rLJ', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1573, 'output_tokens': 24, 'total_tokens': 1597, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='journal_article_2.pdf\njournal_article_1.pdf', name='list_directory', id='a87eaa3f-f48a-4ca6-8a1b-4d00abb33311', tool_call_id='call_PvJHZORBp93qtBgNyO3a6rLJ'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_15ranfVHV1iKzW2F3GllFMPY', 'function': {'arguments': '{"source_path":"05_Publications/01_Journal_Articles/journal_article_1.pdf","destination_path":"06_Archive/journal_article_1.pdf"}', 'name': 'move_file'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 42, 'prompt_tokens': 1615, 'total_tokens': 1657, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_d8864f8b6b', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-c15fa87f-6421-408f-a357-978b863daa9a-0', tool_calls=[{'name': 'move_file', 'args': {'source_path': '05_Publications/01_Journal_Articles/journal_article_1.pdf', 'destination_path': '06_Archive/journal_article_1.pdf'}, 'id': 'call_15ranfVHV1iKzW2F3GllFMPY', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1615, 'output_tokens': 42, 'total_tokens': 1657, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='File moved successfully from 05_Publications/01_Journal_Articles/journal_article_1.pdf to 06_Archive/journal_article_1.pdf.', name='move_file', id='42990d13-fd8f-4e51-a2f8-360fe3b75ef7', tool_call_id='call_15ranfVHV1iKzW2F3GllFMPY'), AIMessage(content='The first journal article has been successfully moved to the Archive folder.', additional_kwargs={'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 15, 'prompt_tokens': 1697, 'total_tokens': 1712, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1408}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_55d88aaf2f', 'finish_reason': 'stop', 'logprobs': None}, id='run-d64afcc0-6e31-4eee-b18b-e2004eaa1b15-0', usage_metadata={'input_tokens': 1697, 'output_tokens': 15, 'total_tokens': 1712, 'input_token_details': {'audio': 0, 'cache_read': 1408}, 'output_token_details': {'audio': 0, 'reasoning': 0}})]}
On branch master
Changes not staged for commit:
  (use "git add/rm <file>..." to update what will be committed)
  (use "git restore <file>..." to discard changes in working directory)
	deleted:    06_Archive/01_Old_Reports/journal_article_1.pdf

Untracked files:
  (use "git add <file>..." to include in what will be committed)
	06_Archive/journal_article_1.pdf

no changes added to commit (use "git add" and/or "git commit -a")


for prompt Move the first journal article to the Archive folder
Building with: 'sudo docker build -t eval_container_geology_and_geophysics --build-arg SETUP_FILE=./setups/setup_geology_and_geophysics.sh --build-arg PROMPT_FILE=./prompts/geology_and_geophysics/prompt4.txt --build-arg GROUND_TRUTH=./ground_truths/setup_geology_and_geophysics/geology_and_geophysics_4 --build-arg AGENT_FILE=./agent_filetoolkit.py --build-arg TOOL_DESC=./tool_descs/tf_af_and_DRAFT/filetoolkit.txt .'
DOCKER Build output:

Detected differences: 
Changes not staged for commit:
  (use "git add/rm <file>..." to update what will be committed)
  (use "git restore <file>..." to discard changes in working directory)
	deleted:    01_Field_Work/03_Sample_Data/old_research_data_1.csv
	deleted:    01_Field_Work/03_Sample_Data/old_research_data_2.csv

no changes added to commit (use "git add" and/or "git commit -a")


Full output: {'messages': [SystemMessage(content='You are an AI agent operating with the file system.', additional_kwargs={}, response_metadata={}, id='c9ea8498-2a7a-4df3-8e57-505aca35a48d'), HumanMessage(content='Copy the old data files to the Sample Data folder', additional_kwargs={}, response_metadata={}, id='b03a474e-07e7-477d-b9ad-bf7c1f3e86f7'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_SabjjeQevYnHQ6d62jHv6KEI', 'function': {'arguments': '{"dir_path":"/"}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 16, 'prompt_tokens': 1405, 'total_tokens': 1421, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_f5bdcc3276', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-403040e5-1276-4dc4-a77a-36f69b4b33f3-0', tool_calls=[{'name': 'list_directory', 'args': {'dir_path': '/'}, 'id': 'call_SabjjeQevYnHQ6d62jHv6KEI', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1405, 'output_tokens': 16, 'total_tokens': 1421, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='Error: Access denied to dir_path: /. Permission granted exclusively to the current working directory', name='list_directory', id='2c516e46-e9ac-4f63-b8ed-9c61bd8fa20e', tool_call_id='call_SabjjeQevYnHQ6d62jHv6KEI'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_HfWsPawAybqBuGJUh42Fkycu', 'function': {'arguments': '{}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 10, 'prompt_tokens': 1445, 'total_tokens': 1455, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_d8864f8b6b', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-76b519d2-8dc6-42a6-8709-d1c296789fb6-0', tool_calls=[{'name': 'list_directory', 'args': {}, 'id': 'call_HfWsPawAybqBuGJUh42Fkycu', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1445, 'output_tokens': 10, 'total_tokens': 1455, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='03_Research\n05_Publications\n06_Archive\n04_Presentations\n01_Field_Work\n02_Lab_Analysis\n.git', name='list_directory', id='a8ce8e91-2452-4453-a6b0-2e1e1a4486bc', tool_call_id='call_HfWsPawAybqBuGJUh42Fkycu'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_wJ4pwPx3TUHdLQfAtxQusjQ1', 'function': {'arguments': '{"dir_path":"/06_Archive"}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 18, 'prompt_tokens': 1491, 'total_tokens': 1509, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_f5bdcc3276', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-fd91fd8d-d03f-4fec-9f17-97d9478ea301-0', tool_calls=[{'name': 'list_directory', 'args': {'dir_path': '/06_Archive'}, 'id': 'call_wJ4pwPx3TUHdLQfAtxQusjQ1', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1491, 'output_tokens': 18, 'total_tokens': 1509, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='Error: Access denied to dir_path: /06_Archive. Permission granted exclusively to the current working directory', name='list_directory', id='9564f1a0-0542-4980-93e7-ccaed170ab00', tool_call_id='call_wJ4pwPx3TUHdLQfAtxQusjQ1'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_Yen37krEWxTxv5uwx0P35dmm', 'function': {'arguments': '{"dir_path":"/02_Lab_Analysis"}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 21, 'prompt_tokens': 1538, 'total_tokens': 1559, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_d8864f8b6b', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-d73c6f6a-b3cf-40b8-a04c-492fcec872d3-0', tool_calls=[{'name': 'list_directory', 'args': {'dir_path': '/02_Lab_Analysis'}, 'id': 'call_Yen37krEWxTxv5uwx0P35dmm', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1538, 'output_tokens': 21, 'total_tokens': 1559, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='Error: Access denied to dir_path: /02_Lab_Analysis. Permission granted exclusively to the current working directory', name='list_directory', id='1b3fea5c-324c-435f-b9ab-2a7a584b9119', tool_call_id='call_Yen37krEWxTxv5uwx0P35dmm'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_1OLgOrN4SdOc79WQVQc9hKa8', 'function': {'arguments': '{"dir_path":"/01_Field_Work"}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 18, 'prompt_tokens': 1589, 'total_tokens': 1607, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_d8864f8b6b', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-33ec8fc3-b051-4663-a538-23f0a9817b1f-0', tool_calls=[{'name': 'list_directory', 'args': {'dir_path': '/01_Field_Work'}, 'id': 'call_1OLgOrN4SdOc79WQVQc9hKa8', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1589, 'output_tokens': 18, 'total_tokens': 1607, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='Error: Access denied to dir_path: /01_Field_Work. Permission granted exclusively to the current working directory', name='list_directory', id='d1f96d82-6271-4ddf-83f8-a7324d90fbee', tool_call_id='call_1OLgOrN4SdOc79WQVQc9hKa8'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_W9cVmXC8k9TEgnf2UeNZHOCL', 'function': {'arguments': '{"dir_path":"/03_Research"}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 18, 'prompt_tokens': 1636, 'total_tokens': 1654, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_d8864f8b6b', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-54563f5a-6560-450c-a9c0-edc1869e80aa-0', tool_calls=[{'name': 'list_directory', 'args': {'dir_path': '/03_Research'}, 'id': 'call_W9cVmXC8k9TEgnf2UeNZHOCL', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1636, 'output_tokens': 18, 'total_tokens': 1654, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='Error: Access denied to dir_path: /03_Research. Permission granted exclusively to the current working directory', name='list_directory', id='8a9b0b1c-c4eb-4996-8bb3-bb7f9424b762', tool_call_id='call_W9cVmXC8k9TEgnf2UeNZHOCL'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_E7Xvzyvv8Z2f1wPXXnWd4KNM', 'function': {'arguments': '{"dir_path":"/04_Presentations"}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 19, 'prompt_tokens': 1683, 'total_tokens': 1702, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1408}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_f5bdcc3276', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-f93237f3-6d5b-47d4-b5cf-42eab4241811-0', tool_calls=[{'name': 'list_directory', 'args': {'dir_path': '/04_Presentations'}, 'id': 'call_E7Xvzyvv8Z2f1wPXXnWd4KNM', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1683, 'output_tokens': 19, 'total_tokens': 1702, 'input_token_details': {'audio': 0, 'cache_read': 1408}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='Error: Access denied to dir_path: /04_Presentations. Permission granted exclusively to the current working directory', name='list_directory', id='873b1fdc-1d5d-4e36-9412-28433838d1ee', tool_call_id='call_E7Xvzyvv8Z2f1wPXXnWd4KNM'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_ZraSaJoIE6EQA6gwVHGPF8Kw', 'function': {'arguments': '{"dir_path":"/05_Publications"}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 18, 'prompt_tokens': 1732, 'total_tokens': 1750, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1664}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_f5bdcc3276', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-4dd41d91-d8be-4e8b-b505-ae3e41e90d83-0', tool_calls=[{'name': 'list_directory', 'args': {'dir_path': '/05_Publications'}, 'id': 'call_ZraSaJoIE6EQA6gwVHGPF8Kw', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1732, 'output_tokens': 18, 'total_tokens': 1750, 'input_token_details': {'audio': 0, 'cache_read': 1664}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='Error: Access denied to dir_path: /05_Publications. Permission granted exclusively to the current working directory', name='list_directory', id='e558fb50-ce79-4acb-a60d-f80876badb27', tool_call_id='call_ZraSaJoIE6EQA6gwVHGPF8Kw'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_ElPrh9cbkE2TbcRbEktadLxm', 'function': {'arguments': '{"dir_path":"/.git"}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 17, 'prompt_tokens': 1779, 'total_tokens': 1796, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1536}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_d8864f8b6b', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-ded507f4-b2cc-40d1-a10b-faa40ca8436a-0', tool_calls=[{'name': 'list_directory', 'args': {'dir_path': '/.git'}, 'id': 'call_ElPrh9cbkE2TbcRbEktadLxm', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1779, 'output_tokens': 17, 'total_tokens': 1796, 'input_token_details': {'audio': 0, 'cache_read': 1536}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='Error: Access denied to dir_path: /.git. Permission granted exclusively to the current working directory', name='list_directory', id='2d8d7a24-0974-4956-aea7-05f103edbc9c', tool_call_id='call_ElPrh9cbkE2TbcRbEktadLxm'), AIMessage(content="It seems I don't have access to list the contents of the directories to locate the old data files. Could you please specify the exact path or directory where the old data files are located, or provide more details about the files you want to copy?", additional_kwargs={'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 51, 'prompt_tokens': 1823, 'total_tokens': 1874, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1664}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_f5bdcc3276', 'finish_reason': 'stop', 'logprobs': None}, id='run-11ef0336-b2e1-426e-85c1-cf7fc1cf51e1-0', usage_metadata={'input_tokens': 1823, 'output_tokens': 51, 'total_tokens': 1874, 'input_token_details': {'audio': 0, 'cache_read': 1664}, 'output_token_details': {'audio': 0, 'reasoning': 0}})]}
On branch master
Changes not staged for commit:
  (use "git add/rm <file>..." to update what will be committed)
  (use "git restore <file>..." to discard changes in working directory)
	deleted:    01_Field_Work/03_Sample_Data/old_research_data_1.csv
	deleted:    01_Field_Work/03_Sample_Data/old_research_data_2.csv

no changes added to commit (use "git add" and/or "git commit -a")


for prompt Copy the old data files to the Sample Data folder
Building with: 'sudo docker build -t eval_container_geology_and_geophysics --build-arg SETUP_FILE=./setups/setup_geology_and_geophysics.sh --build-arg PROMPT_FILE=./prompts/geology_and_geophysics/prompt1.txt --build-arg GROUND_TRUTH=./ground_truths/setup_geology_and_geophysics/geology_and_geophysics_1 --build-arg AGENT_FILE=./agent_filetoolkit.py --build-arg TOOL_DESC=./tool_descs/tf_af_and_DRAFT/filetoolkit.txt .'
DOCKER Build output:

Detected differences: 
Untracked files:
  (use "git add <file>..." to include in what will be committed)
	03_Research/03_Research_Data/old_rock_analysis_1.pdf
	03_Research/03_Research_Data/rock_analysis_1.pdf
	03_Research/03_Research_Data/rock_analysis_2.pdf

nothing added to commit but untracked files present (use "git add" to track)


Full output: {'messages': [SystemMessage(content='You are an AI agent operating with the file system.', additional_kwargs={}, response_metadata={}, id='5d7d73a1-0fa1-466a-95c4-5aa19c933c42'), HumanMessage(content='Copy the rock analysis files to the Research Data folder', additional_kwargs={}, response_metadata={}, id='8e38dfa9-3a9a-44d7-be22-3f4358a4c89f'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_3Ng0RgOyOj6FxhmYFdBq0lul', 'function': {'arguments': '{"pattern":"*rock_analysis*"}', 'name': 'file_search'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 18, 'prompt_tokens': 1405, 'total_tokens': 1423, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_f5bdcc3276', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-59ae6258-674d-407e-b8a4-c2e0f667149d-0', tool_calls=[{'name': 'file_search', 'args': {'pattern': '*rock_analysis*'}, 'id': 'call_3Ng0RgOyOj6FxhmYFdBq0lul', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1405, 'output_tokens': 18, 'total_tokens': 1423, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='06_Archive/02_Old_Analyses/old_rock_analysis_1.pdf\n02_Lab_Analysis/01_Rock_Analysis/rock_analysis_2.pdf\n02_Lab_Analysis/01_Rock_Analysis/rock_analysis_1.pdf', name='file_search', id='59c0c597-6ddc-49a7-b28d-566e309fd7b6', tool_call_id='call_3Ng0RgOyOj6FxhmYFdBq0lul'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_W0hWTYTNC5Mltq3nvxdLzzwP', 'function': {'arguments': '{"source_path": "06_Archive/02_Old_Analyses/old_rock_analysis_1.pdf", "destination_path": "Research Data/old_rock_analysis_1.pdf"}', 'name': 'copy_file'}, 'type': 'function'}, {'id': 'call_cPvaMPHw3XXzXtKG3Q3nLZ3x', 'function': {'arguments': '{"source_path": "02_Lab_Analysis/01_Rock_Analysis/rock_analysis_2.pdf", "destination_path": "Research Data/rock_analysis_2.pdf"}', 'name': 'copy_file'}, 'type': 'function'}, {'id': 'call_Y5JVjcILbjUhFzVfDgtnhd7y', 'function': {'arguments': '{"source_path": "02_Lab_Analysis/01_Rock_Analysis/rock_analysis_1.pdf", "destination_path": "Research Data/rock_analysis_1.pdf"}', 'name': 'copy_file'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 148, 'prompt_tokens': 1484, 'total_tokens': 1632, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_d8864f8b6b', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-de919191-f591-4e87-ba90-fcb17ceb766e-0', tool_calls=[{'name': 'copy_file', 'args': {'source_path': '06_Archive/02_Old_Analyses/old_rock_analysis_1.pdf', 'destination_path': 'Research Data/old_rock_analysis_1.pdf'}, 'id': 'call_W0hWTYTNC5Mltq3nvxdLzzwP', 'type': 'tool_call'}, {'name': 'copy_file', 'args': {'source_path': '02_Lab_Analysis/01_Rock_Analysis/rock_analysis_2.pdf', 'destination_path': 'Research Data/rock_analysis_2.pdf'}, 'id': 'call_cPvaMPHw3XXzXtKG3Q3nLZ3x', 'type': 'tool_call'}, {'name': 'copy_file', 'args': {'source_path': '02_Lab_Analysis/01_Rock_Analysis/rock_analysis_1.pdf', 'destination_path': 'Research Data/rock_analysis_1.pdf'}, 'id': 'call_Y5JVjcILbjUhFzVfDgtnhd7y', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1484, 'output_tokens': 148, 'total_tokens': 1632, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content="Error: [Errno 2] No such file or directory: '/agentworkspace/workfiles/Research Data/old_rock_analysis_1.pdf'", name='copy_file', id='56cdfef4-5ae0-4c3d-85f3-17807d1472c7', tool_call_id='call_W0hWTYTNC5Mltq3nvxdLzzwP'), ToolMessage(content="Error: [Errno 2] No such file or directory: '/agentworkspace/workfiles/Research Data/rock_analysis_2.pdf'", name='copy_file', id='a358b305-6fe9-4785-bd18-f742d6fe961f', tool_call_id='call_cPvaMPHw3XXzXtKG3Q3nLZ3x'), ToolMessage(content="Error: [Errno 2] No such file or directory: '/agentworkspace/workfiles/Research Data/rock_analysis_1.pdf'", name='copy_file', id='995eb028-0c6b-4015-9ede-f06c7053599e', tool_call_id='call_Y5JVjcILbjUhFzVfDgtnhd7y'), AIMessage(content='', additional_kwargs={'tool_calls': [{'id': 'call_e4gdHYesYprOIvdfdGgOc1B3', 'function': {'arguments': '{"dir_path":"/"}', 'name': 'list_directory'}, 'type': 'function'}], 'refusal': None}, response_metadata={'token_usage': {'completion_tokens': 15, 'prompt_tokens': 1735, 'total_tokens': 1750, 'completion_tokens_details': {'audio_tokens': 0, 'reasoning_tokens': 0, 'accepted_prediction_tokens': 0, 'rejected_prediction_tokens': 0}, 'prompt_tokens_details': {'audio_tokens': 0, 'cached_tokens': 1280}}, 'model_name': 'gpt-4o-2024-08-06', 'system_fingerprint': 'fp_d8864f8b6b', 'finish_reason': 'tool_calls', 'logprobs': None}, id='run-26580aa5-0825-4da5-8950-762837b6311f-0', tool_calls=[{'name': 'list_directory', 'args': {'dir_path': '/'}, 'id': 'call_e4gdHYesYprOIvdfdGgOc1B3', 'type': 'tool_call'}], usage_metadata={'input_tokens': 1735, 'output_tokens': 15, 'total_tokens': 1750, 'input_token_details': {'audio': 0, 'cache_read': 1280}, 'output_token_details': {'audio': 0, 'reasoning': 0}}), ToolMessage(content='Error: Access denied to dir_path: /. 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On branch master
Untracked files:
  (use "git add <file>..." to include in what will be committed)
	03_Research/03_Research_Data/old_rock_analysis_1.pdf
	03_Research/03_Research_Data/rock_analysis_1.pdf
	03_Research/03_Research_Data/rock_analysis_2.pdf

nothing added to commit but untracked files present (use "git add" to track)


for prompt Copy the rock analysis files to the Research Data folder
